By Stefan Tenzer, Tobias Hain, Hendrik Berger, Hansjörg Schild (auth.), Peter van Endert (eds.)
Antigen processing is a organic procedure that prepares antigens for the presentation to big cells within the immune procedure known as T lymphocytes. In Antigen Processing: tools and Protocols, specialist researchers within the box offer a entire set of protocols for learning presentation of antigens produced within the common processing pathways for MHC category I and sophistication II molecules. The chapters keep on with chronology of intracellular processing occasions, finishing with popularity of peptide-MHC complexes on the phone floor via T lymphocytes. Written within the hugely winning Methods in Molecular Biology™ sequence structure, chapters comprise introductions to their respective subject matters, lists of the required fabrics and reagents, step by step, effortlessly reproducible laboratory protocols, and key pointers on troubleshooting and averting recognized pitfalls.
Authoritative and useful, Antigen Processing: equipment and Protocols is designed for newcomers and specialists attracted to learning antigen processing.
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Additional resources for Antigen Processing: Methods and Protocols
After performing the gradient we generally wash about 10 min with 100% B (if possible longer). Finally, the column is equilibrated for 10 min. To improve peak separation, the concentration of buffer B should be determined at which the substrate elutes in the chromatogram. At this point in most of the cases the entire elution of the sample is achieved (see Note 17). Ending with this concentration of buffer B makes the gradient shallower and possibly leads to a better separation. The substrate should not elute in the equilibration phase, but also be well separated from processed fragments during the whole gradient.
Of heat shock protein 70 peptide complexes from dendritic cell-tumor fusion cells. J Immunol 177(9):5946–5955 8. Kloetzel PM, Ossendorp F (2004) Proteasome and peptidase function in MHC-class-I-mediated antigen presentation. Curr Opin Immunol 16(1):76–81. doi:S095279150300178X (pii) 9. Asemissen AM, Keilholz U, Tenzer S, Muller M, Walter S, Stevanovic S, Schild H, Letsch A, Thiel E, Rammensee HG, Scheibenbogen C (2006) Identification of a highly immunogenic HLA-A*01-binding T cell epitope of WT1.
Adding TFA can increase the salt concentration. This may negatively affect the mass spectrometric analysis. 14. The following points should be considered when performing the digest: Partitioning of the master mix provides reproducible results. The incubation in the whole master mix raises several problems: (a) To achieve a constant temperature during digestion in the whole approach is difficult. (b) The formation of condensation products in the lid of the sample tube can falsify results. The biological matrix affects the MS signal.